with_OMAT_gene
AT4G13300.1
0.72283500000000000529
<html><body><title>AT4G13300.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u421330001000i/AT4G13300.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u421330001000i/AT4G13300.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u421330001000i/AT4G13300.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224148001000i">AT2G41480.1</a></td><td>0.973361</td><td>electron carrier/ heme binding / peroxidase</td><td>OMAT2P110450</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421331001000i">AT4G13310.1</a></td><td>0.971018</td><td>CYP71A20</td><td>OMAT4P003480,OMAT4P003490</td><td>[OMAT4P003480]-, [OMAT4P003490]-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522429001000i">AT5G24290.1</a></td><td>0.964808</td><td>integral membrane family protein</td><td>OMAT5P107180</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127214001000i">AT1G72140.1</a></td><td>0.963965</td><td>proton-dependent oligopeptide transport (POT) family protein</td><td>OMAT1P020790</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522384001000i">AT5G23840.1</a></td><td>0.962397</td><td>MD-2-related lipid recognition domain-containing protein / ML domain-containing protein</td><td>OMAT5P008090</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222008001000i">AT2G20080.1</a></td><td>0.958591</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421533001000i">AT4G15330.1</a></td><td>0.958159</td><td>CYP705A1</td><td>OMAT4P103520</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420008001000i">AT4G00080.1</a></td><td>0.95359</td><td>UNE11 (unfertilized embryo sac 11)</td><td>OMAT4P000030</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524259001000i">AT5G42590.1</a></td><td>0.952761</td><td>CYP71A16</td><td>OMAT5P110130,OMAT5P110140</td><td>[OMAT5P110130]-, [OMAT5P110140]-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524811001000i">AT5G48110.1</a></td><td>0.952067</td><td>terpene synthase/cyclase family protein</td><td>OMAT5P112190,OMAT5P112200</td><td>[OMAT5P112190]-, [OMAT5P112200]-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523192701000i">AT5G31927.1</a></td><td>-0.678931</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525477001000i">AT5G54770.1</a></td><td>-0.671219</td><td>THI1</td><td>OMAT5P016150</td><td>-</td><td>OMAT5P114270</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220678001000i">AT2G06780.1</a></td><td>-0.663671</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421388001000i">AT4G13880.1</a></td><td>-0.663039</td><td>AtRLP48 (Receptor Like Protein 48)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123237501000i">AT1G32375.1</a></td><td>-0.648048</td><td>F-box family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u324462001000i">AT3G44620.1</a></td><td>-0.621381</td><td>protein tyrosine phosphatase</td><td>OMAT3P011535</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523211201000i">AT5G32112.1</a></td><td>-0.612883</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420661301000i">AT4G06613.1</a></td><td>-0.606629</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220561001000i">AT2G05610.1</a></td><td>-0.604285</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422739001000i">AT4G27390.1</a></td><td>-0.595767</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u421330001000i/AT4G13300.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 6.93e-09</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>6.93e-09 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0006952</td><td>defense response</td><td>16/200</td><td>3.51</td><td>3.78e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0019748</td><td>secondary metabolic process</td><td>11/200</td><td>4.75</td><td>4.25e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006950</td><td>response to stress</td><td>27/200</td><td>2.18</td><td>4.71e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009607</td><td>response to biotic stimulus</td><td>12/200</td><td>3.32</td><td>7.86e-05</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>71/200</td><td>2.92</td><td>2.46e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>120/200</td><td>1.31</td><td>1.86e-05</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>4</td><td>GO:0020037</td><td>heme binding</td><td>18/200</td><td>10.29</td><td>1.89e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0019825</td><td>oxygen binding</td><td>16/200</td><td>11.52</td><td>6.72e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0046906</td><td>tetrapyrrole binding</td><td>18/200</td><td>9.44</td><td>8.84e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>32/200</td><td>3.80</td><td>1.94e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>4</td><td>GO:0004497</td><td>monooxygenase activity</td><td>14/200</td><td>7.84</td><td>4.29e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>5</td><td>GO:0046872</td><td>metal ion binding</td><td>37/200</td><td>2.73</td><td>6.93e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0043169</td><td>cation binding</td><td>38/200</td><td>2.64</td><td>9.85e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0043167</td><td>ion binding</td><td>38/200</td><td>2.64</td><td>9.85e-09</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>147/200</td><td>1.63</td><td>6.45e-17</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G13300&keyword=root">1.43E-16</a></td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>hypocotyl</td><td>-</td><td>40/200</td><td>17.14</td><td>9.98e-39</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>71/200</td><td>3.00</td><td>5.38e-19</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>71/200</td><td>2.93</td><td>2.11e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr017973</td><td>-</td><td>16/200</td><td>11.72</td><td>5.04e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr017972</td><td>-</td><td>16/200</td><td>11.72</td><td>5.04e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>oxygen</td><td>-</td><td>19/200</td><td>8.25</td><td>2.51e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr001128</td><td>-</td><td>16/200</td><td>10.60</td><td>2.61e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr002401</td><td>-</td><td>15/200</td><td>10.84</td><td>8.91e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>monooxygenase</td><td>-</td><td>16/200</td><td>9.37</td><td>1.91e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>electron</td><td>-</td><td>21/200</td><td>5.90</td><td>1.30e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>carrier</td><td>-</td><td>21/200</td><td>5.24</td><td>1.27e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>cytochrome</td><td>-</td><td>16/200</td><td>6.55</td><td>5.10e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>defense</td><td>-</td><td>16/200</td><td>4.59</td><td>9.77e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>lectin</td><td>-</td><td>10/200</td><td>6.79</td><td>3.17e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>group</td><td>-</td><td>19/200</td><td>3.53</td><td>5.48e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>class</td><td>-</td><td>19/200</td><td>3.17</td><td>2.80e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>region</td><td>-</td><td>32/200</td><td>2.22</td><td>7.12e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>metabolic</td><td>-</td><td>27/200</td><td>2.35</td><td>1.20e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>oxidase</td><td>-</td><td>11/200</td><td>4.00</td><td>2.35e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>major</td><td>-</td><td>11/200</td><td>3.85</td><td>3.41e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>response</td><td>-</td><td>35/200</td><td>1.95</td><td>4.26e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>process</td><td>-</td><td>38/200</td><td>1.86</td><td>6.18e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>conserved</td><td>-</td><td>27/200</td><td>1.99</td><td>2.08e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>active</td><td>-</td><td>19/200</td><td>2.32</td><td>2.24e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>inhibitor</td><td>-</td><td>10/200</td><td>3.35</td><td>2.30e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cotyledon</td><td>-</td><td>14/200</td><td>2.66</td><td>2.88e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>bilateral</td><td>-</td><td>11/200</td><td>3.01</td><td>3.36e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>putative</td><td>-</td><td>39/200</td><td>1.69</td><td>3.64e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycosyl</td><td>-</td><td>12/200</td><td>2.81</td><td>3.91e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>alpha</td><td>-</td><td>17/200</td><td>2.33</td><td>4.14e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G13300&keyword=alpha">4.00E-41</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stage</td><td>-</td><td>34/200</td><td>1.76</td><td>4.19e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stimulus</td><td>-</td><td>12/200</td><td>2.79</td><td>4.29e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>groups</td><td>-</td><td>10/200</td><td>3.06</td><td>4.84e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G13300&keyword=groups">2.12E-15</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expanded</td><td>-</td><td>12/200</td><td>2.75</td><td>4.89e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transferring</td><td>-</td><td>10/200</td><td>3.00</td><td>5.71e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>lipid</td><td>-</td><td>10/200</td><td>2.91</td><td>7.32e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>oxidoreductase</td><td>-</td><td>12/200</td><td>2.57</td><td>8.91e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>27/200</td><td>1.79</td><td>1.17e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>petal</td><td>-</td><td>26/200</td><td>1.78</td><td>1.46e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>21/200</td><td>1.92</td><td>1.51e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>23/200</td><td>1.75</td><td>3.20e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>25/200</td><td>1.70</td><td>3.31e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>flower</td><td>-</td><td>15/200</td><td>1.96</td><td>4.44e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G13300&keyword=flower">1.14E-17</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>synthase</td><td>-</td><td>10/200</td><td>2.28</td><td>4.91e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G13300&keyword=synthase">2.00E-35</a></td><td>yes</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>